Add rt length to output ii #373
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mschwoer
commented
Nov 13, 2024
nbs/tutorial_nbs/logging.ipynb
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| @@ -21,11 +21,11 @@ | |||
| "name": "stderr", | |||
| "output_type": "stream", | |||
| "text": [ | |||
| "0:00:00.000142 \u001b[32;20mPROGRESS: test\u001b[0m\n", | |||
| "0:00:00.000142 \u001B[32;20mPROGRESS: test\u001B[0m\n", | |||
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not sure what this was?
GeorgWa
approved these changes
Nov 14, 2024
alphadia/outputtransform.py
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| base_dict[f"{prefix}rt_limit_min"] = stats["rt_limit_min"] | ||
| base_dict[f"{prefix}rt_limit_max"] = stats["rt_limit_max"] | ||
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| base_dict[f"{prefix}rt_duration_sec"] = stats["rt_duration_sec"] |
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I actually agree with Feng that we should convert the values to minutes. We can store them as minutes from the beginning.
| verbosity="error", | ||
| ) | ||
| # Log the full traceback | ||
| if self.path is None: |
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Thanks for the refactor 😄
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| self._config: Config = config | ||
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| # deliberately not saving the actual raw data here to avoid the saved manager file being too large |
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This is just a comment why the dia_data goes back into PeptideCentric and doesn't stay here as one might expect?
nbs/tutorial_nbs/logging.ipynb
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| @@ -21,11 +21,11 @@ | |||
| "name": "stderr", | |||
| "output_type": "stream", | |||
| "text": [ | |||
| "0:00:00.000142 \u001b[32;20mPROGRESS: test\u001b[0m\n", | |||
| "0:00:00.000142 \u001B[32;20mPROGRESS: test\u001B[0m\n", | |||
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We have colored logging. I don't know why but it looks like your machine likes a different ANSI escape than mine???
mschwoer
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First guess at what should be added in terms of raw file stats.
Also some renamings and refactoring of the pickle code.
cf. also #368